Zhen Bai

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Questions related from Zhen Bai

Change the pH of my PDB which contains modified residue(acetylated lysine) and ZN?

The pH of my crystal PDB is 5.5, but I would like to perform a simulation under pH=7. I used PDB2PQR to change the protonation state, but because my structure contains a modified residue...

17 July 2023 525 0 View

Missing heavy atoms (using pdb4amber to convert the PDB file)?

I downloaded my pdb file from RCSB. Cuz I want to use amber tleap, I used pdb4amber to convert the PDB file. Then the error occurred: GLU_29 misses 4 heavy atom(s) ARG_102 misses 6 heavy...

19 June 2023 5,834 2 View