hi
i have been doing immunofluorescence on transwell membrane inserts and have been getting suboptimal images. i fix and stain the cells in transwell insert, and when i mount them i cut the membrane off, place it on glass slide with cells facing up. I then drop a few mounting media on membrane and then a coverslip over it. the pore size is 0.4um and does not permit migration.
1) i have tried fluorescence micoscopes and confocal microscopes but both are giving suboptimal imagings. What kind of microscope is best for this?
2) I notice that after placing the membrane on glass slide, and coverslip over it. there are still some slight creases (uneven regions of membrane that kinda forms bulging upwards). This could explain why when im focusing on one cell, the other regions get out of focused. I was thinking of putting pressure on the coverslip to straighten out the membrane. But will this affect morphology of the fixed cells?
any tips for people who had used this technique before?