Method to extract the voxels and coordinates of the affected regions of WM tracts after TBSS?

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Lucius Samo Fekonja

Hi, here are some useful answers:

https://www.researchgate.net/post/How_can_I_extract_significant_clusters_their_sizes_MNI_coordinates_and_corresponding_FA_values_after_randomise_in_TBSS_analysis2

fslmeants, atlasquery and cluster help to extract the coordinates.

fslmeants:

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Fslutils

cluster:

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Cluster

atlasquery:

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlasquery

and probably fsl's mailing list:

https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0712&L=FSL&D=0&P=245768

Albert Stezin Sunny

Thank you! These links were useful.