Do you know any bioinf. program that would be able to analyze the genomic sequences (ideally using accession numbers from NCBI/ Genebank) and find repetitions from 10 to 30 bp long? it would be great if it has some graphical display of the results but it is not a necessity :D
thx for any suggestions.
Hi Juraj,
I don't know much about this kind of programs about repeats. However, I recommend you one search engine for bioinformatics databases and tools developed by our lab, called DaTo (http://bis.zju.edu.cn/DaTo2/). DaTo is a very useful atlas of biological databases and tools. You could construct your customized search builder inside our web application with several key words, such as "repeat", "genomic sequences", etc. Hope DaTo could help.
Best,
Yanshi
thx for your answers. Do Repeatmasker and Repeatmodeller work on bacterial genomes too?
Good question! here a link in Biostars answering your question:
https://www.biostars.org/p/221580/
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