Is there anyone interested in collaborating in assessing the molecular diversity using SNP marker?

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Tesfaye Woldesemayate Woldetsadik

I am interested to detect the genetic variation and the relationship among different populations of T. schimperi and identify characteristic molecular markers specific to some populations and to detect the possible influence of geographic distribution on the genetic variation. I have 180 individual samples collected from nine mountain systems which can be considered as 9 population.

Pritesh Sundar Roy

Hi Tesfaye,

If you have already done the SNP genotyping, I can help you with statistical analysis.

Overall genetic diversity, diversity within and between population and isolation by distance over geographic distance which certainly lead to a very good publication.

Best wishes

Thanks Pritesh Roy,

Actually I don't have the SNP genotyping that can be used for analysis.That was my request for those who could collaborate in doing the analysis using SNP marker.

I hope you could help me the analysis for ISSR-PCR data, what I am doing currently.

Best Regards,

Ok I can surely help in ISSR-PCR data analysis.

Thanks Muavviz, and pritesh

All the samples are already extracted but the gel documentation is not yet completed .

Good day.

Pierre Devaux

Do you have any draft for this species and NGS data that could be used to defined SNP based markers?

Dear Pierre Devaux,

I don't have the NGS data. There is no previous molecular work done in this crop other than essential oils related researches. so what do suggest i could do in this regard.

Good day,

I would go for any technology which does not required a draft sequence to identify SNP, IDP to be used with a relevant technology for this kind of markers. For e.g. DArTseq, GBS...

Mohamed A. El-Esawi

I can help you to analyze ISSR data as well as SNP genotyping. Best

Thanks Mohamed

I will communicate you as soon as the scoring is completed.

Good Day,

Muhammad Aslam

Dear Mohamed

Can we collaborate in assessing the genetic diversity in indigenous maize germplasm of Pakistan by using SNP with focus of Provitamin A.

Dear Tesfaye

You are most welcome. Please let me know once you get the scoring completed. Best regards.

Dear Muhammad Aslam

Of course we can. You are most welcome. Please message me more details about when we should do. looking forward to hearing from you. Best regards

Dear Mohamed El-Esawi

Thank you very much for this favor.

Please let me know your email address so that I can give you a mail with all details

Dear Muhammad

My email address is [email protected] or [email protected]

Thanks

Thank you very much.

mine email address is [email protected]

Dear Muhammad Aslam,

Thank you. Ok, I look forward to receiving your email with details.

Thank you

That is great i will let you know.

Best regards,