I had 1 set of 11 protein coding nucleotide sequences of 11 primates Species. and i draw a phylogenetic tree . I want to know the no of mutation has occur in each branches or want to know the mutation rate in each branches.
My questions are,
1- Can i calculate probable no of mutation in each branch?
2- Is there any tools available for that? If not, any processes that is available?
3-I also like to know that mutation rate in linages, can i do that?
4- I can't do it with mathematical formulas so can you suggest me some tools, if available?
5- As i want to do a mutation analysis, is there any thing you can suggest?