Tools to perform whole genome clustering by 100% sequence identity?

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Abhijeet Singh

https://academic.oup.com/nar/article/46/14/e83/4990634

https://academic.oup.com/bioinformatics/article/34/22/3921/5038468#124253427

Article A Novel Approach to Clustering Genome Sequences Using Inter-...

Pratanu Kayet

thank you so much Abhijeet Singh sir

Jiabin Huang

using usarch (https://www.drive5.com/usearch) and set the id=1.0

e.g.

usearch -cluster_fast query.fasta -id 0.9 -centroids nr.fasta -uc clusters.uc