Any gromacs utility to measure radius of curvature? How is it different from the radius of gyration?
Hi,
you can use "g_vesicle_radius", a customized gromacs tool from http://md.chem.rug.nl/~mara/softa/ site.
You can do so by electron microscopy following negative staining if they are large membrane vesicles. If they are microvesicles, you will have to measure in thin sections at high magnification. There are standard methods in the literature.
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I have an XRD pattern that fits Co3O4 but I think it is NiCo2O4. If anyone has the JCPDS data, could you please help? Thanks
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im recently very new to experimenting with nanoparticles and i would like to coat gold nanoparticle onto glass slide as well. I thought APS(amino silane) coated slides with positive charge would...
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Can anyone suggest normal mode analysis tools that can be used to differentiate 2 states of the protein- in the presence and absence of a ligand?
06 November 2014 4,730 5 View
I would like to plot no. of water molecules within a cut-off distance as a function of time. Any gromacs utility that will help me? Thanks in adv
03 September 2014 685 5 View
We use to prepare 1.5M tris pH 8.8 and 1 Mtris ph 6.8 for SDS and we keep it at room temperature. After few days I could see there is a increase in pH
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Nearlly 5 to 6 times I have done my western blotting, in which not all the protein in my gel is transferred efficiently to PVDF membrane and we use wet transfer method for blotting 100 volts for...
24 July 2014 3,818 9 View
I would like to get the names of a few proteins that show bending dynamics in solution. Are there any transport proteins that shown similar movements? Kindly post them here. Thanks in advance.
12 June 2014 6,727 7 View
In two domain proteins there are movements possible along the hinge. Is anyone aware of the energy involved in this hinge movement?
12 June 2014 4,207 8 View
How to calculate the RMSD values for a MD simulation using MOE?
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When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.
16 June 2021 0 0 View
Hi, I am using GROMACS 5.1.4 to simulate water in contact with a surface. I am only interested to calculate some properties of water near the surface. Let's say at a distance of x nm from the...
03 March 2021 9,989 2 View
I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance
03 March 2021 3,568 1 View
Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...
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Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...
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