4dtv, four-fold synonymous (degenerative) third-codon transversion, has replaced the Ks to estimate homologue distance at neutral sites.
Is there any script/tool to calculate pairwise 4dtv for two homologous gene pairs?
Chintan Jethva
Mr. Tao Shi,
It is not the subject of my concern, however you can refer to this article with doi: 10.1016/j.molp.2016.04.016
https://www.sciencedirect.com/science/article/pii/S1674205216300533
where 4dtv analysis is performed and suggested link of useful perl/python scripts (github link below).
https://github.com/tanghaibao/bio-pipeline
Hope this will be helpful.
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Xiaofei Yang
Do you have the script? I did not find the scripts in https://github.com/tanghaibao/bio-pipeline .
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