Tao Shi

2 Questions 1 Answers 0 Followers

Questions related from Tao Shi

Best Tools for Visualization of synteny or genome alignment?

Dear all, I would like to highlight a selected region of the synteny (collinearity) which only contains ~10 gene pairs. I have the gff file and the homolog pairs (links). What is the most...

15 March 2020 5,679 2 View

Is there any ready-to-use (perl/python) script to calculated 4dtv for pairwise CDS alignment?

4dtv, four-fold synonymous (degenerative) third-codon transversion, has replaced the Ks to estimate homologue distance at neutral sites. Is there any script/tool to calculate pairwise 4dtv for...

05 December 2017 8,075 2 View