STRUCTURE, DARWIN, NTsys software are frequently used for SSR diversity estimation, is there any package in R-studio that can also be used for the same
Yes. Adegenet.
https://github.com/thibautjombart/adegenet/wiki
Dear Rohit,
following some links that can help you with SSR analysis in R:
https://grunwaldlab.github.io/Population_Genetics_in_R/index.html
https://github.com/NESCent/popgenInfo
https://popgen.nescent.org/index.html
http://www.corehunter.org/r.html
Regards
In the link you will find 17 packages that can help you with your analysis
https://popgen.nescent.org/PACKAGES.html
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