I need to compare two different transcriptome database, and separate transcripts with high similarity
If the databases can be extracted in FASTA format, then the command line BLAST program from NCBI would allow you to do all sorts of filtering.
https://www.ncbi.nlm.nih.gov/books/NBK279690/
Thanks Julian,
I will try it.
Data Security Big Data
14 August 2023 2,922 6 View
I'm also studying PhD on the topic 'A study on Anchor investment and IPO returns in India'. In my research i'm basically trying to compare price performance of Anchor backed IPOs and non Anchor...
10 June 2020 2,955 0 View
Border Security, Changing Dynamics of Border Security, COVID-19
04 May 2020 9,554 0 View
If you had a data set which exhibited both non-normally distributed and non homogeneous,which statistical test would you use compare two sample mean? if i go with parametric test normality and...
04 March 2020 2,771 9 View
Actually im working on Initial public offering In India.Where SEBI market regulator has introduced a new concept Anchor investor in 2009.So now i have collected data of IPO listed on NSE platform...
21 December 2019 4,066 4 View
Conflict, Peace building, nation building, state building, development, post conflict recovery
12 June 2019 551 2 View
I'm analysing the home ranges of a monkey species. I need to calculate the vegetation cover in the home range of monkeys. I'm using QGIS as my mapping software.
18 November 2016 8,307 9 View
I want measure the spatial movement of the eye simultaneously EEG recording. What are the available methods to do this ? The eye tracker should be placed away from the brain cap, remotely.
14 December 2015 2,066 3 View
Biological signals play an important role in providing correct motion intention of the users to the assitive robots. What roles will play by EEG and FNIRS when they used as a method to grasp the...
04 April 2015 8,132 3 View
gtec brain cap + Gammabox + Nihon kodhen input box + Nihon kodhen amplifier. If you have experience on this combination please give your comments. (Functionality, Operation, Limitations and...
24 February 2015 8,596 3 View
What is the most suitable experimental setting to understand the consequences of a particular gene: (1) targeted degradation of the specific transcription factor (TF) of the gene, followed by...
04 August 2024 6,265 1 View
I have an RNA-seq data that I have analysed using Limma-voom and have extracted the gene IDs, log2FC and the p-values. At p value < 0.05, I have over 10,000 DEGs, however, when I run the GO...
31 July 2024 225 2 View
Hi researchers! I'm working on soil texture analysis, and the end result for sand is doubtful because there is black sediment appearing after drying, as shown in the figure. Is it considered sand?...
30 July 2024 557 2 View
I'm a PhD Student. From Northwest Agriculture and Forestry University China. My Problem is this I start my work on bhlh79 transcription factor gene. I do my Y2H 5 time but the colonies appear on...
30 July 2024 1,412 8 View
isolation of microplastic from sludge sample using centrifugation ..
23 July 2024 6,418 0 View
What happens in snapTotal- seq? (Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors https://www.nature.com/articles/s41467-024-50291-3) In this protocol, several RT...
18 July 2024 10,010 0 View
I am working on implementing a Kalman filter integrated with ARMA parameters, as described in the article "Predicting Time Series Using an Automatic New Algorithm of the Kalman Filter"...
12 July 2024 8,116 2 View
NA
11 July 2024 8,969 1 View
Hello everyone! I would appreciate some advice regarding the filtering of structural variants. The variant caller used for discovery-“DELLY or DELLY2”using whole-genome sequencing and Whole...
09 July 2024 498 1 View
I was wondering if it is possible to form a permanent open "ssDNA bubble" similar to a transcription bubble (>13 nucleotides) within E. coli. These criteria are important: 1. Open ssDNA...
07 July 2024 8,275 5 View