I want to align mRNA with the genomic sequence. I was using MGAlignit earlier but the server is not responding now. Do you know of any alternate tool?
Please try this: https://www.ncbi.nlm.nih.gov/sutils/splign/splign.cgi?textpage=online&level=form
Try out my own developed gui based allignment tool, BLGAST-By-SKUAST on sourceforge
https://sourceforge.net/projects/blgast-by-skuast-k/
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