I tried to open the pdb docked files of discovery studio in ligplot. First i opened the file in chimera. It was successfully showing the docked structure of ligand and protein but while opening it in ligplot, an error 'no ligand or metal found' was being shown. So is the docked pdb files obtained from discovery studio, compatible in ligplot or not?
If you have the latest version of the ligplot+ 4.5.3 or you can download it from its official website. It is java based gui program which requires only java runtime envioronment on your computer system. From the open source or other softwares once you check the ligand is present or not in your complex that you haveobtain from discovery studio. Only after these conformation you load your pdb to ligplot+ by file>open>pdb files option then check it.. I think so that you get the results of your query protein-ligand complex.
yes it is. if you have latest version lo ligplot or you can try the save as pdb option in chimera and write the pdb of your protein ligand complex. then try to open this pdb in ligplot. hope it will work
can you sent me the file? i will try to create image by ligplot
- Badges
- Science topic