use Cell Marker:

http://biocc.hrbmu.edu.cn/CellMarker/search.jsp

for macrophage it should be CD68

Hi Di Yang

you can also take a look at the PSEA algorithm (https://bioconductor.org/packages/release/bioc/html/PSEA.html) to extract data from RNA mix.

fred

Thank you all !

this is also great:

https://shenorrlab.github.io/bseqsc/vignettes/bseq-sc.html#data-preparation

The software xCell is used for enumerating cell subsets, including macrophages and fibroblasts, from bulk RNAseq data:

http://xcell.ucsf.edu/