RNA seq was done for wild type, overexpression and rnai mutant plants. After analysing the reads, it was found there are no common genes which is upregulated in ox plant and downregulated in rnai mutant and vice versa.

Have got only list of genes commonly upregulated in both ox and rnai, and downregulated in ox and rnai.

Is it possible or there is an issue with samples given for sequencing?

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