I have been trying to generate clones using pENTR DTOPO for gateway cloning. I am able to amplify my insert, set up a reaction and get colonies. But when I do a colony PCR with insert specific primers I see nothing but primer bands at less than 75bp .
The same happens when I use the M13 primers (vector specific) for colony PCR at an annealing temperature of 50 .
I use q5 polymerase for amplification of the insert because the pENTR DTOPO kit says I have to generate blunt ends for the cloning, having introduced CACC to the 5' end of the forward primer. (CACC ATG ) .
I do not seem to see a band corresponding to my insert . Insert size around 1.5kbp .
could you please help ?