I am trying to sterilise table egg content in order to inoculate them with a measurable number of bacterial cells, then try to isolate bacterial DNA out of the homogenate to identify at which number we'll be able to isolate DNA from that homogenate.
the egg contents will be pretty sterile I'd think. Why not do the whole thing in a cell culture hood? Wash off the outside of the egg with ethanol, open it and use Sterile PBS to dilute it, then innocculate that? Should be much more straightforward than worrying about inefficient UV sterilisation, or (even worse) trying to filter sterilize something as viscous.
UV is not very penetrating as a sterilizing agent, and even if you make the eggs thin enough for penetration (like a thin layer) it will not remove any contaminating DNA.
Thanks to you all, egg content is not sterile, I have already isolated bacteria from the content, and previous researchers also did. A vertical transmission of bacteria during the egg formulation might occur in infected hens.