I want to do molecular dynamics simulation of adsorption. For this purpose, I want to place two graphene sheets on both sides of the layer. How can I disable these pages so they don't interact?
In the Materials Studio software, graphene can be modeled as an inert sheet using a variety of approaches. One common approach is to simulate graphene as a 2D material within a periodic boundary condition.
Here's an overview of how you can model an inert graphene sheet in Materials Studio;
Create a Graphene Structure
Define the Unit Cell
Apply Periodic Boundary Conditions;Specify periodic boundary conditions in all three dimensions (x, y, and z) to create an infinite graphene sheet.
Assign Force Field Parameters
Energy Minimization; Perform an energy minimization to relax the atomic positions and remove any steric clashes or high-energy configurations.
Finally use Molecular Dynamics or Other Simulations
To simulate a molecular dynamics simulation of adsorption with two graphene sheets on both sides of the layer, you can use Materials Studio to create an inert graphene sheet and disable the interactions between the graphene sheets.
Here's a general approach;
Create the Graphene Sheets
Combine the Graphene Sheets
Define Interactions
Disable Interactions
Energy Minimization
Molecular Dynamics Simulation
It is recommended to refer to the Materials Studio documentation or tutorials for detailed instructions for your specific version and requirements.