In silico SSR mining statistical validation?

More Deepika Srivastava's questions See All

Is it possible if SSR loci showed no mutation they can still be expected to show a high variation?

I was just searching how mutations and variations are related to each other. Some papers suggested the lower substitution rates of cpDNA than nuclear DNA and from this considering a higher rate of...

03 April 2014 9,823 0 View

What is the basic concept of Functional Domain Marker Analysis and how does it relate to SSR containing sequences?

Please help me out.

31 December 2013 7,111 2 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Muhammad Sufian

Have you compared your SSRs with ChloroMitoSSRDB ?

http://www.mcr.org.in/chloromitossrdb/index.php

Deepika Srivastava

yup..already..i just want to know about an option other than wet lab validation..actually I have designed primers and also done in silico PCR. I just want to validate in silico PCR results with some stastistical method whether they are reliable as we normally determine after wetlab techniques..