How do you identify transposons in leishmania, specially SIDERs?

Can any one suggest any tool or any bioinfomatics approach to do so?

11 December 2014 2,080 2 View

How do I circularize a plant mitochondrial genome using a de novo based approach?

11 December 2014 9,756 5 View

How to use SSPACE for scaffolding ?

I have an hybrid contigs of 454 + Illumina + SOLiD which is around 850 Mb. Now I want to create scaffolds using SSPACE with 20kb (3 libraries) of 454 paired end reads which have been converted...

07 August 2012 6,472 4 View

Hybrid assembly of complex genome

I have an hybrid data of 454 + Illumina + SOLiD which i have assembled into 157439 contigs covering around 1.3 GB genome. Now I want to create scaffolds using 20kb (3 libraries) 454 paired end...

06 July 2012 6,172 6 View

Hybrid Assembly of Complex Genomes

I am trying to assemble hybrid reads using PE and BAC reads. I have shredded the sequences 1Kb with 800bp overlap and I am assembling with Newbler. I am giving input of 1 GB but getting output of...

06 July 2012 6,114 7 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View