I want to merge two contigs together make one scaffold.Can anyone suggest some tools?

09 September 2014 1 977 Report

I have tried SSPACE were the contigs are extending but not merging in one to form a scaffold. For assembly i have used gsASSEMBLER.

Kindly suggest.

Chitrabhanu S. Bhunjun

Hi,

You can try using SGA (String Graph Assembler), Scaffolder (which is in the Ruby programming language), SOPRA (Statistical Optimization of Paired Read Assembly), SOAPdenovo2 and

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