I have 10 sequences with 200 nucleotides. I want to align and analyze nucleotide 1 to 50 of these 10 sequences then align nucleotide 2 to 51 then nucleotide 3 to 52 and etc until nucleotide 150 to 200, Also for protein sequences. I want to know if I can use MEGA5 to do this and if not is there such software that can do it?

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