I read the article "Prediction of HIV drug resistance from genotype with encoded three-dimensional protein structure"
URL:https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-S5-S1
The authors use "Delaunay triangulation" for many mutant HIV protein, and they make numerical vector representing protein structure and sequence.
I am interested that "Delaunay triangulation" makes same length vector although each mutant HIV has different number of atoms.
Anyway, I'd like to try this method, but I could not find this program.
Could you please teach me where it is and if possible, teach me the program which is used via python or R language.
If you know similar methods, you also teach me.
Sorry to say selfish, please help me.
It seems you wanted to know how to tessellate the protein coordinates. For you already have an intended use for it.
Uses are as many as your imagination can genrate, look at this one, for instance:
Ilyin VA , Abyzov A , & Leslin CM (2004) Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Science: A Publication of the Protein Society 13(7):1865--74.
Best wishes,
Rogelio
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