Hi y'all. When I try to dock a halogenated ligand with VinaXB.exe, I get the
Setting up the scoring function ...
Error: insufficient memory!
message. When I use Vina.exe instead, I get results without any problem, but without halogen bonds either.
Does anybody have any suggestions on how to solve this problem?
Thanx!
Dear Milos Svircev thank your for your interesting technical question. Please see the following potentially useful links which might help you in your analysis (no guarantee):
http://support.sas.com/kb/45/491.html
and
http://ftp.sas.com/techsup/download/hotfix/HF2/B25.html#45491
Also please have a look at
FIX AN INSUFFICIENT MEMORY ERROR
https://www.delete-computer-history.com/insufficient-memory-error.html
I hope this helps! 😊
Dear Frank T. Edelmann thank you very much for your answer. I'm afraid I'm not sure what to do with first two links though - I don't use SAS software on my computer so I don't think those hotfixes are applicable to my case.
As for the third link, I tried all the listed hacks and unfortunately they didn't help.
I'll edit and elaborate my question to further clarify the situation.
Try lowering you exhaustiveness. I had this same problem when dealing with large proteins or proteins that contain some special groups. it works when lowering exhaustiveness.
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