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Questions related from Aby Jimson
I want to make schiff base from amino acid and aldehyde but I am not getting any precipitation. I tried using methanol and ethanol as solvent and adding KOH to dissolve the amino acid in the...
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What is the best way for High performance liquid chromatography of chlorophyll? What will be the best solvent concentration?
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I have done a 50 nano second protein simulation using Gromacs and obtained an RMSD value greater than 3 nm. is it ok to proceed with it or is the value incorrect?
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I have ran a simulation of a protein structure using Gromos force field and obtained the radius of gyration. Is it mandatory to get a linear plot? How does high or low RoG matters? What it implies...
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What is the use of energy range in the config file in autodock vina? What is the normal values?
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Hi. I am working with ligands containing Se and Te. It is possible to dock them using AutoDock 4.2 since i have added thwir parameters. But can i do the same with vina? Can we add additional atom...
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Hi. Is it mandatory to optimise our ligand before docking using Autodock or Autodock vina? I have not received the structure from any database therefore the structure was drawn using Marvin draw...
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Importance of RMSD in GROMACS
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