Hello everyone, I have some questions related to result interpretation using the HDOCK server. How do I select the best dock model? Which ligand RMSD value is better? Because I got ligand RMSD values higher than 150. The platform mentions this: The ligand RMSDs are calculated by comparing the ligands in the docking models with the input or modeled structures. Therefore, the ligand RMSD is not necessarily a metric of the accuracy for the corresponding model.

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