How to run molecular dynamics simulation for protein in discovery studio 3.5 software?

More Bala Subramaniyan's questions See All

which material is used as base for thin film sample preparation in XRD analysis?

kindly guide me to prepare a Thin-film sample of nanoparticles for XRD analysis.

10 January 2021 3,744 4 View

Why is Statement of Problem one of the most challenging part of academic research? Why do supervisors pay more attention to it instead of methodology?

Some MSc and Ph.D. supervisors are having a lot of issues with understanding the Problem Statement of their students' research works. Sometimes, it leads to complete rejection of the whole...

04 January 2021 3,574 6 View

How to check spread of AAV2 virus that doesn't express fluorophores?

Hi, I am injecting AAV2-Retro virus (AAV2-retro-EF1a-DIO-FLPo-WPRE-hGHpA from Addgene) that carries cre-dependent flp recombinase, in the mouse dorsal hippocampus and I need to verify that the...

08 November 2020 9,559 3 View

Anyone knows about .odb_f file generated by ABAQUS?

Hello all, I'm running a Bone Remodeling simulation in ABAQUS in which I just use basic ABAQUS Static simulations in every loop with an amplitude table to model the loading behavior & after...

19 October 2020 4,417 2 View

How to apply distributed load in a 2D model with plane stress/plane strain thickness in ABAQUS?

Hello all, I'm currently working on setting-up a 2D bone remodeling problem of a femur from literature. I take a 2D femur geometry and give it an out-of plane plane stress/plane thickness in...

06 October 2020 2,623 5 View

Is it possible to get a standard questionnaire or how to develop it, to measure perception & attitude of healthcare professionals towards investment?

I'm planning to adopted a standard questionnaire to conduct a survey that will measure the perception and attitude of healthcare professionals on investment and access to loans in the...

20 September 2020 4,911 2 View

In case of nanofluid flow within an enclosure, does the heat transfer trend follow the same trend as the thermal diffusivity of the nanoparticles?

I am trying to simulate the nanofluid flow within an enclosure for different nanoparticles e.g. Ag, Cu, CuO, Al2O3 and TiO2 . In the case of Ag and Cu, the heat transfer rate are almost same. I...

04 September 2020 7,988 7 View

Does Recycled aggregate offer strength?

Construction and demolition waste are increasing in large amount and now it is employed as a replacement of coarse aggregate in concrete, use of these type of waste do offer strength in concrete...

07 June 2020 4,548 11 View

May I know, which statistical analysis and conceptual framework will be suitable for my study?

Helo, I am interested in looking into Secondhand smoke exposure and support level towards smoke-free legislation. I am planning to use secondary data. Can anyone advice on which statistical...

23 May 2020 6,381 2 View

Can I use flow cytometry to detect a rare population of around 150 cells in a single-cell suspension of 150,000 - 500,000 cells?

I am looking to detect a rare population of 150 cells via flow cytometry and analyze a subset of this population with one cell-surface marker. Sample size will be about 150,000 to 500,000 cells in...

12 May 2020 8,336 7 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

After a reference from Int J Body Compos Res, can any body help?

Hi, I am after the reference below, my library says it cannot obtain a copy either locally or internationally, any help appreciated! Chris Wang ZM, Heshka S, Wielopolski L, Pi-Sunyer FX, Pierson...

03 March 2021 6,193 1 View

What techniques can I use to determine the miscibility of polymer blends?

The term miscibility refers to the single-phase state in thermodynamics. I do not mean the compatibility of different components. To determine the miscibility I know several techniques such as...

03 March 2021 4,107 4 View