I am working on the molecular characterization of several genes, using standard PCR. Is there is a specific approach that could be used for achieving this reduction?
The smallest PCR reaction volume that I know is provided by PCR analyzer AriaDNA (1.0- 3.6 μl) https://www.lumexinstruments.com/catalog/pcr_analysis/aria_dna.php
Ahmed H. Shatta There are optimization procedures for finding the lowest volume which efficiently amplifies your DNA, which can be based on orthogonal experimentation. I would be happy to give you an elaborate explanation in the messages if required.
Explanation - Efficiency of PCR reaction can be better and can be worked with reduced volume also if your proportions of input DNA and primer/probe concentrations are proportionate even in low volumes so that the plateau phase of PCR doesn't occur before the average cycle count you are providing.
Suggestion based on explanation - So you can provide reduced primer/probe concentration and also reduce input DNA proportionally so that at least a limited amount of volume can be reduced.
For example- you can do a 10ul or 40ul instead of a 20ul but you will have to use 1/2 or double volume of all your PCR components and reagents. I would recommend however to increase your DNA volume. By this you can scale up or scale down your pcr reaction volume from the established protocol.
I am doing a PCR with the NEBNext Ultra DNA library Prep kit for Illumina. However The cDNA that I want to amplify is attached to beads and thus tend to sediment. To avoid this, I divise my cDNA on beads in 4 and run 4 PCR for one sample. I would like to reduce the volume of my reaction.
I currently mix :
24µL of cDNA on Beads
+ 25µL of master mix
+ 0.5µL of each primers (that I reduced to eliminate the excess remaining primers after PCR)