I'm currently working on anther culture of tomato and most of embryos I've got usually ended up looking glass-like structure, that makes they are so hard to continue their development into normal structures.
I don't have much experience with tomatoes, but there are a few things that our lab has found that can help a bit with other species. The first is to use some type of vented culture vessel. Allowing a little bit of air flow can reduce the humidity and may potentially help the plantlets stop holding onto so much water. The other thing would be to use a gelling agent that is less "wet". For example, Agar typically results in a firmer medium than if you were to use something like Gelzan, which reduces the amount of available water and should help slow the rate of uptake.