I am performing a study in which I am observing the interaction between two proteins following a stimulation. Each protein is tagged with half of a GFP moiety and therefore upon interaction would hope to see a GFP signal. I carry out my stimulations at room temperature and take images every hour. The issue that I am facing is that my unstimulated samples (with split GFP constructs) also show a fair amount of background that increases as I leave the cells at RT (not sure if reconstitution is favorable at RT). How do I go about reducing the background noise?

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