Hello Bioinformaticians out there-

I have performed some ChIP-seq experiments and at the end of it all, I have a bunch of intergenic regions that are enriched. I now need to predict promoters (bacterial) in those regions. I tried some promotor prediction web servers, but none of them were useful. Most of them just timed out (I guess because they cannot handle complex data sets like ChIP-seq). Any help?

Thank you