I've been working with a standard gentamicin protection HeLa cell invasion assay using mutations of Shigella flexneri. I'm seeing very low bacterial growth after the assay. My wild-type strain is showing invasion colonies of around 100, and my mutations are showing very few to no bacterial colony counts.
Ideally, I'd like to see in the 300-500 count range. Is this a problem anyone else has confronted and overcome? Are there ways to optimize the assay that I'm not seeing?
Thanks!