If you are measuring mRNA then GAPDH makes sense. for cellular studies, you isolate the lymphocytes from spleen. culture them overnight and measure the cytokine secretion in the culture media using luminex bead array. you can normalize the data to number of cells.
What are you looking for? When people are looking for immune response in spleen, they will often make a single cell suspension and look for ability of T cells to produce cytokines upon re-stimulation either by flow cytometry (intracellular cytokine) or by ELISpot. While this does not tell you what cytokines are present in the spleen and to what amounts they are being produced, it will tell you the potential of cells to make specific cytokines.
in all immunological studies spleenocytes are isolated with MACS. a proper control will take care of the side effects. or you can do real time RT-PCR which does not represent the real scenario. other thing you can do a intra cellular staining and read on FACS
I think it would be interesting to put spleen cells in culture and to do a sample unstimulated and another one stimulated (with plate bound CD3 or peptide if you did antigen specific stimulation or allogeneic cells if you did allotransplant). normally the spontaneously secreted cytokines are very low - this is why you would rather analyse the response after restimulation. You could also use PMA + Ionomycin + Brefeldin A to look by intracellular antibody staining
parallel I will also use unstimulated mice as a control
in addition I could isolate the cells of the organ of stimulated and unstimulated mice, bring it into cell-culture and take the supernatant after 24hours