Hi,
Recently, we performed parallel experiments of single cell (sc) ATAC-seq and scRNA-seq on the same cell sample using 10X Kit and its protocol. As I know so far, cell labeling for them could not be coupled. Theoretically, barcode labels (IDs for each cell) were different due to their library preparation processes.
So, my question is how to find out or match a pre-defined cell cluster (subtype) in the ATAC-seq analysis, such as pearman correlation between genome-wide gene expression and chromatin accessibility?
Any explanation or triable suggestion will be kindly appreciated!
Thank you!