Can someone help me on increasing the number of geometry optimization cycles in ORCA. I already adjusted the number of SCF iterations per cycle.
from hyperchem prog.
Look for page 603 of the Orca manual 4.2.1. Use the following command in the input file:
%geom
MaxIter 50 #50 is the default number, use more if necessary
end
I would suggest also using Orca input library as handy tools for selecting paraments in .inp file:
https://sites.google.com/site/orcainputlibrary/
There are many ways for mRNA to intervene with genome expression. This question is raised for experts in CRISPR systems. Any RNA does not stand alone within acell. There are many ways to become...
18 February 2021 9,109 5 View
Hi everyone We need Fast Green to electroporate plasmid into mice embryos, therefore we simply need it to see some color in the liquid we are electroporating so that electroporation is more...
07 February 2021 1,671 2 View
Which plasmids will be the best for making mRNA vaccine? What are the points for consideration when choosing suitable plasmid for such purposes?
02 February 2021 9,092 1 View
Hi all, I am hoping for some assistance. I (the researcher) would like to know whether it is possible and how to go about building a Jupyter Notebook that a collaborator could load in their web...
26 January 2021 1,027 1 View
Hello I'm using image registration over the bands of the micasense red-edge camera. Using RedEdge band as the fixed image. After removing inliers I can notice that inliers of the NIR band are...
13 January 2021 3,980 2 View
It is generally asserted that all smallpox carriers are symptomatic. But what is the actual evidence for this? This is an absolutely crucial assumption, and, if wrong, makes the epidemiology of...
21 December 2020 8,249 13 View
I've generated a set of maps for my receptor using ADT (AutoDockTools). It has resulted in the files: .A.map .C.map .HD.map .N.map .NA.map .OA.map .SA.map .d.map .e.map But when I try loading the...
20 December 2020 7,721 2 View
Hi all, There are two big questions here. I am extremely grateful for even the smallest contribution that yields a result. This is concerning Raccoon(1) original, not Raccoon2. The original...
17 December 2020 4,302 2 View
Hi all, Please imagine this to be a brand new machine with the latest installation of: Autodock Vina Autodock AutodockTools (MGLTools). I'm following a Nature Protocol for the prediction of...
14 December 2020 2,191 3 View
Hi all researcher, I am looking for references of python code that could identify the dynograph card. The identification includes identifying the shape of the dynograph result. My goal is to make...
13 December 2020 2,649 4 View
I ran RT-qPCR for a control and a treated group and it appears that my gene of interest was not expressed at all in any of the subjects in the control group. So I was wondering if I could...
20 February 2021 6,243 10 View
I know that my target is in my sample as I extracted it from cell culture myself. These plots show some amplification. The first one seems O.K for the first 36 cycles but then collapses at the...
14 February 2021 2,809 2 View
The samples made out of spring steel are taken from same lot. The specimens were shaped following heating to forging temperature - Forming- Hardening -Tempering methods. After storage of almost 6...
11 February 2021 952 6 View
The parameters of the curve all seem acceptable, typically reactions results are above 0.9852, -3.1 to -3.6 slope, and 90-110% reaction efficiency. The results seem to be what I would expect from...
04 February 2021 1,138 3 View
02 February 2021 9,790 2 View
I ran PCR in order to analyze a P-element excision on a mutant drosophila line. My results were not conclusive, however that is beside the point. I ran a temperature gradient in order to optimize...
25 January 2021 9,164 11 View
Does anybody know of, or have a method suitable for HPLC analysis that allows to separate violaxanthin from neoxanthin? I want to quantify the xanthophyll cycle (violaxanthin, antheraxanthin and...
21 January 2021 5,775 5 View
I have designed a primer for Bacillus subtilis sfp gene. As I have mentioned the size is 191 bp. however I need some suggestions regarding PCR temperatures and cycle length. As the it is smaller...
09 January 2021 8,309 4 View
In a random graph, the number of paths that cannot be further extended in an hamiltonian path or an hamiltonian cycle, can be roughly be separated in two equal parts? I have an idea for solve for...
07 January 2021 9,782 2 View
I've been wondering if removing the random primers from the reverse transcription reaction either with a column or precipitation before using it as a qPCR template reduces the background a bit in...
25 December 2020 6,258 4 View