How to identify the pseudo gene by insilico method from genome?

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Is there any available Protein-Protein Docking MD simulation protocol by Gromacs software ?

I have protein protein docking complexes of some vaccine, i would like to perform MD simulation Studies of complexes using Gromacs software, Please help if anyone have standard protocol or...

06 July 2019 6,361 4 View

Which software is good for docking virtual screening ?

I am searching for software which use 100000 compounds for docking virtual screening and freely available. Please suggest me fast and reliable software's. Thank you.

06 July 2018 9,408 9 View

How to implement chemical structure similarity search tool in local website?

Hello all, I want to embedded a chemical structure similarity search tool in my website (Database), but i was unable to do so, I know that Marvin do provide such facilities but I want some...

03 April 2018 9,431 3 View

How to identify the Pseudogene in whole genome sequence ?

I have to identify the number of pseudo gene present in genome sequence, Please suggest me what are the methods by which i can identify the pseudogene sequences. Please suggest me some...

05 June 2017 6,777 3 View

Is there any method to retrieve the full length protein sequence from denovo sequenced draft genome data?

By using Augustus gene predictor i have predicted the genes from draft genome but, how should i confirm that these proteins were full length or incomplete? is there any bioinformatics approach to...

04 May 2016 2,955 2 View

Removing specific multiple lines from a text file using perl - any thoughts?

I have file with 6000 line from these some are not useful i want to remove those lines by using perl program. Say input file...

03 April 2014 2,246 5 View

Can anyone tell me how to convert Fasta format (.fasta) multiple sequences into (.nhx OR nh) format for phylogenetic predictions?

I want to generate phylogenetic tree of my protein sequences by TreeBest software for that I want my sequences in these format (.nhx , .nh or .mfa ) for further analysis right now they are in...

31 December 2013 5,755 7 View

Can anyone suggest any tools or software for protein-protein interactions?

specially for host-pathogen PPIs.

09 October 2013 7,513 5 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

03 March 2021 6,994 5 View

Do I need to do linear regression before running mediation analysis using PROCESS MACRO by Hayes ?

I just wanted to check if I need to run a linear regression separately if I am using PROCESS MACRO to run mediation analysis. Thank you.

02 March 2021 4,359 3 View

Sample dilution for quantitative analysis using ELISA?

If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis

02 March 2021 7,670 3 View

Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !

02 March 2021 5,785 3 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View