I've trimmed my sequences in Geneious, exported them as fasta documents, and imported them into fasta. I'd like to use Mesquite to align my sequences. To do so, I downloaded Muscle align from Github and keep running into this error: MUSCLE Align quit, possibly because of an error (1). Please examine StandardOutputFile and StandardErrorFile in the analysis directory for information.
The StandErrorFile says :
Invalid command line
Unknown option in
Help appreciated!