How to find the variation between genome sequences?

Ariharan V N @Ariharan_V_N

12 December 2013 1 5K Report

I have a set of sequences of same genus, I have to find the variation between the sequences, and suggest the tools.

Christian Rückert

Hi!

What exactly are you looking for? SNPs? Core and accessory genes?

Depending on how similar they are, MAUVE might be a good start:

http://gel.ahabs.wisc.edu/mauve/

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