As the original published paper of Geneland (back in 2005) and most of published papers suggested, the diagrams of posterior probabilities of population membership should group the closely related populations with lighter shading, indicating the higher probabilities of membership.
However, when I run the map of posterior probabilities of population membership, my output always showing the contrary coloring trend from other papers, which means the closely related populations tend to have darker shading in each specific cluster (I attached the photo of one cluster)
I'm wondering if I should need other software (e.g. distruct) to re-frame the output so I can get the similar coloring trend like most papers? (In each cluster, the lightest part indicate the center of closely related group), though actually I didn't see any papers mentioned they have re-edit the output by any specific software.
or I can simply modify the coloring in the Geneland in some way?
(the version I use is Geneland.gui from https://github.com/gilles-guillot/Geneland)
Thank you very much
The lightest part as u said indicates the closely related individuals. There is no option for editing the light and dark part of geneland diagrams. There must be some problem in running the software. As per ur diagram the two populations are in the same cluster- the upper right corner one and one towards the top left corner.
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