How to download Lung cancer (LUSC) gene expression data from TCGA(https://portal.gdc.cancer.gov/repository)?

14 May 2024 1 2K Report

How to download Lung cancer (LUSC) gene expression data which includes tumor tissue samples and corresponding control tissue samples from TCGA(https://portal.gdc.cancer.gov/repository). Any information or resources you could provide. I look forward to your guidance. Thanks in advance.

Arnab Mukherjee

Bioconductor packages can be used to download TCGA datasets.

Example for downloading LUSC gene expression datasets:

#Install and load the library TCGAbiolinks in the R

library(TCGAbiolinks)

#Query the datasets using the following criteria using GDCquery (it may change accordingly).

exp

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