Hello All,

Greetings,

I have 2 cohort datasets with 500 sample size each and 200 SNPS of genotype files as (example1.gen and example2.gen) as input files and trying to generate other formats from the .gen files such as (example1.bgen and example2.bgen), sample ID and phenotype for the cohort data set (example1.sample and example2.sample) and VCF format (example1.vcf & example2.vcf). I am currently using SNPTEST (latest version) for GWAS analysis . Is there any possible ways to look into it ???

Thanks in advance

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