I am very new to proteomics analysis. I have got raw files from core facility running thermofisher TMT 16plex 4 hours.

I cannot find on maxquant the option TMT16Plex there is only up to 11 plex. When I trying to add extra I cannot name them or I don't know how to do it. There is also an import option but I don't k ow what kind of file do I need.

Does anyone had the same issue and can help me how to solve it?

I also have results in excel format but I don't have bioinformatics knowledge to proceed and do some heat maps or made groups and different other comparisons because is a mix of groups in 4 runs and there are all groups in different run of course with the same isobaric marker. If you can suggest a tool like R maybe I can try.



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