Can anybody tell me how to construct this scatter plot for KEGG or GO classification like the image I have attached?
Hello H Surachandra Singha
Use the link to learn how to construct such a plot using gruplot
http://yulab-smu.top/clusterProfiler-book/chapter12.html
You can also check out the link for alternative
https://www.researchgate.net/post/How_do_you_make_a_KEGG_classification_histogram
Best Regards,
Akpofure Enughwure
You can use MATLAB to construct the scatter plot, like the image you have attached.
You can use Matlab or R programming
See the paper below :
KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor
Regards.
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