How to construct Scatter plot for KEGG or GO classification visualization?

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Akpofure A Enughwure

Hello H Surachandra Singha

Use the link to learn how to construct such a plot using gruplot

http://yulab-smu.top/clusterProfiler-book/chapter12.html

You can also check out the link for alternative

https://www.researchgate.net/post/How_do_you_make_a_KEGG_classification_histogram

Best Regards,

Akpofure Enughwure

Murat Kurt

You can use MATLAB to construct the scatter plot, like the image you have attached.

Zerouali Bilel

You can use Matlab or R programming

See the paper below :

KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor

Regards.