How show box in CHIMERA?

More Roja Rahmani's questions See All

What is the difference between surface and bulk solution? Which one is more polar?

Hi, What is the difference between surface and bulk solution? Which one is more polar? does it depend on the characteristic of surface? Since ZnS surface(nano sheet) is partly hydrophobic, so...

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How show in ball and stick view by OVITO?

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Problems with g_dist?

Hi, my system contains 30 same molecule around nanotube. each molecule is in 2nm far from nanotube. i want to know how this distance change during simulation time. I have attached the same...

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How calculate adsorption number of molecule in molecular dynamics simulation?

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10 November 2018 1,857 6 View

Is it rational to freeze/constraint bond in absence of kb for forcefield parameter?

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How can i calculate the (ADF)angular distribution of the angles between water molecule water and surface?

Hi, How can i calculate the angular distribution of the angles between water molecule water and surface? surface during molecular dynamics simulation? I did simulations by GROMACS, is it...

08 September 2018 5,365 3 View

How can i calculate the distribution of water polarization above surface?

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How define Mn in AMBER forcefield?

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How functionalize ZnS nanotubes with different organic and inorganic molecules?

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How do I replace a file with a more recent version of a paper that was uploaded to ResearchGate?

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Gromacs first step of minimization ?

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How do you delete a duplicate pdf for the same paper on ResearchGate?

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AUX gas reading problem on QE with full MS and PRM method in one run?

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JCPDS 65-7246 file please?

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Difficulty with permittivitt and Magnetic Permeability Calculations?

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How to do pca analysis of c-alpha atom of the protein?

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Milad Bagheri

Dear Roja Rahmani

for open .gro format in chimera haven't any problem but for instead of doing this, you can Tk Console in vmd software.

This means that you should open .gro format by typing in terminal ubuntu at your directory : (for instance)

vmd em.gro

you see that .gro file will open than you should go to tk console and type"pbc box"

I hope to help you

Roja Rahmani

Thank you @milad bagheri

Ibwant to visualize it by CHIMERA not VMD.