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Questions related from Milad Bagheri
Dear researcher Most MD studies are performed for extracellular conditions where NaCl concentration is high, while we are trying to perform MD for some intracellular molecule, where K, Mg, HPO4...
01 January 2019 5,117 1 View
I have a question about a wnt signaling pathway. I want to know how exactly a Wnt–FZD–LRP5/6 trimeric complex is formed. Whether WNT3a (activator of LRP6) and Dkk1 (inhibitor of LRP5/6) have a...
08 August 2018 2,990 1 View
As you know, one main problem after determining the third structure using modeling or crystallography is finding the position of protein active site (binding pocket) with desirable potential...
08 August 2018 2,036 10 View
Hi Dear researchersI am trying to understand the mechanism action and the correct orientation of a small molecule to an Ag Nanoparticle. I want accomplish that by simulating them with Gromacs...
07 July 2017 6,333 5 View
Hi Dear researchersI have some questionsI wanna drawing/model a nanoparticle with a computational method. I know some tools for drawing nanoparticle such as (Material studio, Avogadro, Gaussview...
05 May 2017 7,387 6 View
Dear Researchers, I wanna calculate harmonic potential bond (bond length(r0), force constant(k)) and Lj parameters via a computational method for MTE-MOS complex's which contains a Mo in (pdb ID:...
04 April 2017 3,173 4 View
Hii wanna get a .itp file for my complex (mos-mte) in (pdb id:3nvy) in order to run a molecular dynamics simulation by amber force field in gromacs. But acpype does not support Mo . How can I add...
04 April 2017 5,813 1 View
