I want to build a model of query sequence (qseq) based on the alignment against the multiple templates using the `model_mult.py'.
from modeller import *
from modeller.automodel import *
env = environ()
a = automodel(env, alnfile='qseq-mult.ali',
knowns=('1bdmA','2mdhA','1b8pA'), sequence='qseq')
a.starting_model = 1
a.ending_model = 5
a.make()
when I run the model, the final output could only generate molpdf score. what syntax should I use to generate that DOPE score?
Hi,
Please go through the Model Building (4th) step of the below attached link.
https://salilab.org/modeller/tutorial/basic.html
Thank you Singh, but this file is for basic modeling, while multiple template (model_mult.py) is for advance modeling.
Then probably below attached link will solve your problem.
https://salilab.org/modeller/tutorial/advanced.html
I have used this link in building the model, but what syntax, should I add to the below algorithms to generate DOPE
from modeller import *
from modeller.automodel import *
env = environ()
a = automodel(env, alnfile='qseq-mult.ali',
knowns=('1bdmA','2mdhA','1b8pA'), sequence='qseq')
a.starting_model = 1
a.ending_model = 5
a.make()
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