You could try a specific inhibitor for you GTPase in your assay. If these are cells, you could add the drug to the culture medium and after the incubation test various parameters.
I forgot to mention that it is a protein localized within the nucleus and hence the drug titration isn't an option. Furthermore, I had tried it with a mutant variant of the same, with calcium binding site disabled, but NMR didn't give me good results.