Hi,
I want to simulate a beta peptide flanked by chemical moieties. I have seen some articles on beta peptide simulations. Most of them have used GROMOS53A6 or 54A7 ff. So, how to generate topology information for beta peptides? Thank you
Dear Venkat,
We used the MMFF94x force field for the computation of beta-peptides.
Best regards
István
Dear Istvan,
Thank you for the quick reply. How can I get this forcefield? Can I import this forcefield to GROMACS?
This question I can not answer. We used the MOE software package for the simulation.
Thank you Istvan. I will try to use MOE software.
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