Venkat Reddy Chirasani

3 Questions 14 Answers 0 Followers

Questions related from Venkat Reddy Chirasani

How can I plot a radial density curve?

Dear all, I would like to plot radial density curve for my spherical lipid system. I have plotted RDF graph using gromacs utility g_rdf as shown below: gmx rdf -f traj.xtc -s topol.tpr -n...

08 August 2014 4,582 5 View

How can I simulate beta peptides?

Hi, I want to simulate a beta peptide flanked by chemical moieties. I have seen some articles on beta peptide simulations. Most of them have used GROMOS53A6 or 54A7 ff. So, how to generate...

07 July 2014 9,946 4 View

How to find binding energy between two proteins?

I would like to calculate binding energy of a docked complex (Protein-Protein and protein-peptide). Are there any servers available? Thank you.

03 March 2014 8,352 5 View