Hydroxyquinoline (HQ, excessive amount) shall be adsorbed on the silver NPs after taking ligand exchange with citrate. I assume the HQ ligand is a short stabilizing ligand so that the Centrifugal force would occur some aggregation of NPs during the spin down due to Ag coalescence. You shall try to find some HQ solubility-dependent separation approaches, e.g two phase solvent or pH. Or an anionic exchange using a positively charged bead-based separation will be an option to remove the outgoing citrate molecules after the ligand replacement.